Exploring Estuarine Nutrient
Susceptibility
D O N A L D S C A V I A * A N D Y O N G L I U
School of Natural Resources & Environment, University of
Michigan, Ann Arbor, Michigan 48109
Received December 1, 2008. Revised manuscript received
March 12, 2009. Accepted March 17, 2009.
The susceptibility of estuaries to nutrient loading is an
important issue that cuts across a range of management
needs. We used a theory-driven but data-tested simple model
to assist classifying estuaries according to their susceptibility
to nutrients. This simple nutrient-driven phytoplankton model is
based on fundamental principles of mass balance and
empirical response functions for a wide variety of estuaries in
the United States. Phytoplankton production was assumed
to be stoichiometrically proportional to nitrogen load and an
introduced “efficiency factor” intended to capture the myriad
processes involved in converting nitrogen load to algal
production. A Markov Chain Monte Carlo algorithm of Bayesian
inference was then employed for parameter estimation. The
model performed remarkably well for chlorophyll estimates, and
the predicted estimates of primary production, grazing, and
sinking losses are consistent with measurements reported in
the literature from a wide array of systems. Analysis of the
efficiency factor suggests that estuaries with the ratio of river
inflow to estuarine volume (Q/V) greater than 2.0 per year
are less susceptible to nutrient loads, and those with Q/V
between 0.3 and 2.0 per year are moderately susceptible. This
simple model analysis provides a first-order screening tool
for estuarine susceptibility classification.
Introduction
Eutrophication is a threat to coastalwaters that ismost often
a result of society-mediateddeliveryof excessnutrients (1-4).
This overenrichment can lead to serious andnegative effects,
such as harmful algal blooms, habitat loss, biodiversity
changes, bottom oxygen depletion, and fishery loss (4, 5).
Determining nutrient loading targets to ameliorate these
impacts is ultimately anestuary-specificenterprise; however,
there is also a growing need to understand more generally
why some systems are more susceptible than others so that
management guidance can be provided across systems (6).
The diversity of estuaries has made classification an
important anddifficult question for researchers anddecision
makers since the1950s (7-9). TheNationalResearchCouncil
proposed 12 factors that control estuarine responses, in-
cluding physiographic setting, primary production, nutrient
load, dilution, water residence time, stratification, hypsog-
raphy, grazing of phytoplankton, suspended materials load
and light extinction, denitrification, spatial and temporal
distributions of nutrient inputs, and allochthonous organic
matter inputs (4). Some recent U.S. classification efforts
include a dissolved concentration potential (DCP) index (2),
an Assessment of Estuarine Trophic Status (ASSETS) meth-
odology (10), theCoastal andMarineEcologicalClassification
Standard (CMECS) conceptual classification (11), stressor-
response relationships developed over broad geographical
scales (12), and a multivariate regression analysis as part of
a synthesis toguidedevelopmentof estuarinenutrient criteria
(13). Similar efforts have also been developed for Peninsular
Malaysia (14), Portugal, the EU Water Framework Directive
(15), andEnglandandWales (16). A reviewof 26 classification
schemes found that past systems focusedmainly on terrest-
rial and aquatic systems and for specific regions and habitat
types (9, 12). Kurtz et al. (6) reviewed dozens of classification
schemes and concluded that the distinctions among ap-
proaches appear to be between hierarchical and nonhier-
archical structures, data-driven and theory-driven, and
functional vsphysical structural and that someclassifications
combine two or more methods or combine classification
with other tools like modeling.
Our approach is nonhierarchical, theory-drivenbut data-
tested, and functional. It is a modeling approach to identify
key features useful for classification.We use a simplemodel,
based on fundamental principles ofmass balance, empirical
response functions, and an introduced estuarine efficiency
term for a wide variety of estuaries to explore the basis for
their susceptibility to nutrient loads, ultimately contributing
to a classification scheme to guide nutrient control policies.
As such, our aim is todevelop a screeningmodel for estuaries
in general, not a prediction or forecastingmodel for specific
estuaries.
Methods
Data Sources. Data for 99 estuaries are described in NEEA
EstuariesDatabase (http://ian.umces.edu/neea) (3). For our
analysis, we used 75 of those systems: 14 estuaries were
dropped from our analysis based on extreme physical
characteristics (e.g., very shallow, very deep, long residence
time, or excessive loads). Ten others were dropped because
early attempts with our model generated estimates of
estuarine efficiency that were quite unrealistic (see below
and Supporting Information). The remaining 75 estuaries
(37 drowned rivers; 19 lagoons; 9 coastal bays; 10 fjords) still
represent a diversity of depths (0.5 to 46 m), volumes (1.7 ×
107 to 2.9 × 1010 m3), residence times (4 to 979 days), total
nitrogen (TN) loads (1.3 × 104 to 5.3 × 107 kg/year), and
summer surface chlorophyll concentrations (2.3 to 24.8
µg/L) (see Supporting Information). Freshwater discharge,
salinity, and ocean boundary nitrogen concentrations were
also obtained from this database; however, we found the
reportedvalues foroceansalinitywere inconsistentwithother
published values for some subtributaries of the Chesapeake
Bay. Accordingly,we recalculatedwater residence times (see
below), based on updated salinity estimates for the Chester,
Choptank,Rappahannock,Tangier/Pocomoke,andYork river
subestuaries from 1222, 713, 185, 1120, and 121 days to 276,
85, 108, 586, and 92 days, respectively.
Growingseasonchlorophyll a concentrationswerederived
from Sea-viewing Wide Field-of-view Sensor (SeaWiFS)
imagery reportedmonthly for 1997 to 2004 (http://geoportal.
kgs.ku.edu/estuary/) (17). We used June-August averages
for each of the 7 years. Annual average total nitrogen daily
loads, based on the most recent SPARROW model updates
(18), were provided by the U.S. Geological Survey (R.
Alexander, personal communication). Because SPARROW is
not well suited for the relatively flat Florida watersheds, we
used NOAA-report fluxes reported on the NEEA Web site.
Model Development. While models can be useful tools
for describing and predicting specific estuarine responses to* Corresponding author e-mail: scavia@umich.edu.
Environ. Sci. Technol. 2009, 43, 3474–3479
3474 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 43, NO. 10, 2009 10.1021/es803401y CCC: $40.75 2009 American Chemical Society
Published on Web 04/10/2009
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changes in nutrient loads (e.g., refs 19-24), they can also be
useful inexploringmoregeneral responses toprovide insights
into what controls their susceptibility to eutrophication
(25, 26, 16, 27). We developed a nutrient-driven phytoplank-
ton model, simplified from previous studies on lakes and
estuaries (28-31), that relates summer average phytoplank-
ton biomass to spring TN daily loads and estuarine physical
characteristics. Rather than model detailed nitrogen dynam-
ics (including phytoplankton uptake and biogeochemical
cycling), wemodeled summer phytoplankton production as
proportional to spring TN load, similar to earlier work
simulating biological oxygen demand in the Gulf of Mexico
and the Chesapeake Bay (20, 22, 24). The nitrogen loading
rate was converted to phytoplankton carbon production by
multiplying load by a factor encompassing the C:N ratio for
nitrogen-limitedproduction, the relationshipbetweenspring
averagedailyandannual averagedaily load, andan“estuarine
conversion efficiency factor” intended to capture processes
converting nitrogen load to algal production. This is admit-
tedly a very strong simplification, but it served the purpose
of relating production to load and introducing the efficiency
factor that became very useful in assessing estuarine
susceptibility. We discuss this in detail below; however, we
used this bulk property, the estuarine conversion efficiency,
to calibrate themodel and then to explore how it variedwith
various estuarine properties.
Phytoplankton losses aremodeled as afirst-order sinking
rate and a zooplankton grazing term modeled as quadratic
inphytoplanktonbiomass. This is similar to approachesused
for zooplankton mortality (32-34) under the assumption
that zooplankton abundance varies with phytoplankton
abundance. Thus, the overall rate of change of mixed-layer
phytoplankton carbon (B) is:
dB
dt
) In-
QoutB
V1
- vs1
′ B- LB2 (1)
In)
TNL
V1
R)
TNR +TNO
V1
R (2)
TNO)QinNO, V1) zfV, vs1
′ )
vs
z1
)
vs
zfz
(3)
where B is phytoplankton biomass (g C/ m3), In is phy-
toplankton production (g C/ m3/day) derived from spring
nutrient load (TNL, g N/day) and calibration term (R, g C/g
N);Qout is the outflow to the ocean (m3/day), vs1′ is the sinking
rate (1/day), vs is the sinking velocity (m/day), z1 is themixed
layer depth (m), z is the estuary average depth (m), L is the
grazing loss rate (m3/g C/day), TNL is the sumof TNR (spring
riverine TN load, g N/day) and TNO (ocean nitrogen influx,
g N/day) (ignoring atmospheric deposition sources and N
fixation), NO is the ocean nitrogen concentration (mg/L); Qin
is ocean inflow (m3/day), V1 is the mixed layer volume (m3),
and V is the estuary volume (m3). The ratio of mixed layer
depth to total depth zf is 1.0 for well-mixed estuaries and
assumedtobe0.5 for stratifiedestuaries.Weassumed lagoons
and all other estuaries with depth <3.0 m were well mixed
and that all fjords were stratified.
The water residence time (WRT, day), Qout, and Qin can
be calculated from average estuarine salinity (Sal1), ocean
boundary salinity (Sal0), and river discharge (Q), all of which
are in the NEEA Estuaries Database, and water and salt
balances, as:
QinSal0)QoutSal1
Q+Qin)Qout
w{Qout)Q Sal0Sal0- Sal1Qin)Q Sal1Sal0- Sal1 (4)
WRT is defined as:
WRT) V
Qout
) V
Q
×
Sal0- Sal1
Sal0
(5)
To explore the model’s ability to reproduce summer
phytoplankton concentrations,we solved eq1 at steady state
under the assumption that this will provide analytical power
and adequate distinctions among estuaries (35). While
phytoplanktonbiomass certainly varies over shorter periods
and for most estuaries those differences are generally
attenuated at annual scales (36), there remains sufficient
discrimination amongestuaries for this analysis. The steady-
state solution, obtained by setting (dB)/(dt) ) 0, is:
B)
-(Qout+V1vs1
′ )+ √(Qout+V1vs1′ )2+ 4InLV 12
2LV1
(6)
Parameter Estimation. Bayesian analysis has been in-
creasingly applied in ecology (37, 38) because of its ability
to handle uncertainty, incorporate prior information such
as data andmodeling experience, and develop probabilistic
assessments to support decision making (39). Compared to
traditionalmodeling approaches, Bayesian-estimatedmodel
parameters are embodied in theposteriorprobability density
functions,whichprovidecredible intervals forbothparameter
values and predicted states under various probability levels
(40). See Supporting Information for details.
We used WinBUGS (version 1.4.3) (41), called from R
(version 2.6.0; R2WinBUGS (version 2.1-8)) (42). With
WinBUGS, we estimated a single value for parameters L,vs,
and C:CHL across all estuaries and individual values of R for
each estuary. Our previous modeling analysis revealed that
the four parameters are correlated (see Supporting Informa-
tion), so we used the following informative priors, based on
literature information and experience (39), to provide relia-
ble parameter estimates: L ∼ N(0.80,0.25)I(0,); C:CHL ∼
N(50,20)I(0,); vs ∼ N(0.3, 0.10)I(0,). The numbers in the
brackets represent themean and the standard deviation and
I(0,) denotes censoring to eliminate negative values. We
conducted a sensitivity analysis on the forms of the informa-
tivepriors (see Supporting Information) and found theywere
relatively insensitive to the variance changes. We used a
noninformative prior for R, assuming a normal distribution
with unspecified mean and common variance, since we did
not have credible prior information for this derived property
(see Supporting Information) and we wanted to allow the
algorithm maximum flexibility in its estimation.
Four goodness-of-fit measures were used to test model
results between predicted and observed values: correlation
coefficient, slope of the regression, coefficient of determi-
nation, R2, and the root mean squared error (RMSE) (see
Supporting Information).
Results
C:CHL and Chlorophyll Estimates. The model performed
remarkably well, with a correlation between predicted and
observed chlorophyll of 0.99 (Supporting Information). The
slope of the regression fit is 0.96 with an intercept of 0.17
which is not significantly different from zero. R2 is 0.99 with
a RMSE of 0.50 and scale-independent RMSE of 0.051. We
used a potential scale reduction factor, Rhat, to determine
model convergence. Resulting Rhat values are all close to
1.0, indicating themodel converges well (42). Themean and
standarddeviationof theposteriordistribution for thecarbon
to chlorophyll ratio was 56 ( 10.6, well within the range
reported in the literature (43-47). While these estimates are
satisfying, it is important to also compare our calculated
production and loss rates to observations because even
simplemodels are capable ofmatching state variables based
on erroneous, yet compensating, rate processes (e.g., ref 28).
VOL. 43, NO. 10, 2009 / ENVIRONMENTAL SCIENCE & TECHNOLOGY 9 3475
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So we made those comparisons to ensure that this is not
simply sophisticated curve-fitting.
PhytoplanktonPrimaryProduction.Model estimates for
growing-season phytoplankton primary production ranged
between 0.05 and 8.0 g C/m2/day, with first, second, and
third quartiles of 0.24, 0.45, and 0.78 g C/m2/day. These
estimates represent the central tendency of production for
eachestuarywithdistributionsassociatedwithR (eq2). Thus,
the overall distribution of the model production estimate is
a mixture distribution. For comparison, we compiled sum-
mariesofphytoplanktonprimaryproduction for112estuaries
andcoastal systems (48-51) andcompared theirdistributions
to our model. For cases where production estimates were
reported as annual average daily rates, we assumed that 70%
of the annual productionoccurs during the 7month growing
season.Comparing thenotchedboxplots (Figure1) illustrates
that the distribution of our predictions are indistinguishable
from those empirical estimates.
Grazing andSinking LossRates.Themean and standard
deviation of grazing and sinking parameters were 0.69 (
0.27 m3/g C/day for L and 0.21 ( 0.07 m/day for vs, well
within expected ranges for grazing (33, 16) and sinking
(46, 47). In addition, grazing loss as a percent of primary
production was 66 ( 18%, compared to 24 ( 15% for
sedimentation, suggesting that grazing is often themain loss
term. Estimates for the Strait of Georgia (52), Halifax Harbor
(53), ChesapeakeBay (54),MobileBay (55), andApalachicola
Bay (56) all suggest that grazing was the primary factor
controlling phytoplankton biomass. The consistency of the
general patterns of model output and these observations is
demonstrated by comparing the frequency distributions of
model output to these field measurements across a wide
array of systems (Figure 2 and Supporting Information).
While some of our grazing estimates seem to be a bit higher
than those reported in the literature, the overall comparison
is quite good.
EstuarineEfficiency.Theabove comparisonsofmodeled
andmeasuredproduction, sinking, andgrazingdemonstrate
that the model not only fits the observed phytoplankton
chlorophyll concentration across this diverse set of estuaries
but also fits key rate processes well. This lends credence to
using the model to explore relative estuarine sensitivity
through our estimates estuarine efficiency. The Bayesian
estimated mean value of R that best fit chlorophyll observa-
tions ranged between 0.52 g C/g N and 159.5 g C/g N, with
theuncertainty around individual values relatively constant.
Mean and standard deviation of the coefficients of variation
were 17 ( 1%.
This calibration term,R, is composed of three factors: the
nitrogen-limited C:N ratio for production, a factor relating
average spring daily nutrient loads to annual average daily
loads, and the estuarine efficiency factor. Because we want
to explore the efficiency term,weneed to factor out the other
two; although it is important to note that the scaling factors
influence the absolute value but not the patterns of R across
estuaries.
The Redfield C:Nmolar ratio is often used for these types
of estimates; however, recent evidence suggests that under
nitrogen-limited conditions, carbon overconsumption (57)
drives the C:N ratio higher. For our analysis, we used 12.7
(10.9mass ratio), basedonanaverageof14estimates reported
in the literature (58-64). Inmost estuarine systems, average
daily spring loads are considerably higher than the annual
average.Forouranalysis,weassumedtheaveragedaily spring
load was 2.0 times the annual average daily load. Thus, to
estimate estuarine efficiency we divided R by 21.8 (10.9× 2),
producing efficiency terms between 0.02 and 7.34 (inter-
quartile range: 0.34-2.28). Estuaries with efficiency terms
greater than 1.0 can be considered “recyclers”; those below
1.0 can be considered “N sink” systems or highly flushed
systems. This is discussed further below.
Discussion
Themodel reproduced summer chlorophyll concentrations
as a function of total nitrogen load and the physical
characteristics of the estuary for a wide range of estuarine
types and conditions (Supporting Information). This was
based on several simplifying assumptions, the most useful
ofwhichwas the introductionof anestuarine efficiency term,
representing the fraction of the spring nitrogen load con-
verted to algal biomass. There are, of course,manyprocesses
thatmodulate that conversionand reduceoverall conversion
efficiency, including denitrification, delivery of unavailable
nutrient forms, sedimentburial, and rapidflushingcompared
to algal production. There are also processes that enable
recycling of nitrogen and increase the conversion efficiency.
Our analysis does not distinguish among those processes
but rather explores their net effect. We explored how
predictedestuarineefficiency, ε)R/21.8, variedwithdifferent
FIGURE 1. Frequency distribution of net primary production estimates for our study (75 estuaries) and that summarized in
Montes-Hugol et al. (15 estuaries) (51), Smith and Hollibaugh (22 estuaries) (50), Boynton et al. (45 estuaries) (48), and Underwood
and Kromkamp (30 estuaries) (49).
3476 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 43, NO. 10, 2009
estuarine properties and found themost useful relationship
with the ratio of river discharge to estuarine volume (Q/V)
(Figure 3, Supporting Information). Note that Q is the river
discharge, not the sum of that discharge and ocean inflow,
which is convenient because the latter is more difficult to
estimate.
In this analysis, efficiency appeared to decrease roughly
with the inverse square root of Q/V: ε ) 0.908(Q/V)-0.47
(R2) 0.53), where ε represents mean values arising from the
75 estimated normal distributions. This is logical because
load generally increases with inflow (Q) and, for a given
estuarine volume, one would expect the system to be less
efficient in processing that load and, in fact, be overloaded
for high values of Q. Conve
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