Marine natural products
D. John Faulkner
Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA
92093-0212, USA
Received 1st September 1999
Covering: 1998
Previous review: 1999, 16, 155
1 Introduction
2 Marine microorganisms and phytoplankton
3 Green algae
4 Brown algae
5 Red algae
6 Sponges
7 Coelenterates
8 Bryozoans
9 Molluscs
10 Tunicates (ascidians)
11 Echinoderms
12 Miscellaneous
13 References
1 Introduction
This Report is a review of the literature of marine natural
product chemistry for 1998. Earlier reports published in this
journal cover the period from 1977 to December 1997.
Compared with the research activity reported during 1997,1 the
major difference in 1998 was reflected in a shift in interest from
marine bacteria to fungi of marine origins. Once again the
literature is dominated by reports of sponge metabolites, but the
excessive speculation regarding possible microbial origins for
these metabolites is gradually being replaced by experimental
studies. Interest in the synthesis of marine natural products
continues to rise and there have been many studies of the
pharmacological and biochemical mechanisms of action of
marine metabolites. The continued interest in marine natural
products chemistry from outside of the field bodes well for its
continued development.
The format for this review is identical to that of its immediate
predecessors. The review does not provide a comprehensive
coverage of all research involving chemicals from marine
organisms but concentrates on reports of novel marine natural
products with interesting biological and pharmaceutical proper-
ties. Biochemical studies involving marine organisms, studies
of the biosynthesis of marine natural products and reports of
primary metabolites are specifically omitted. Wherever possi-
ble, the biological and pharmacological properties of new
marine natural products have been reported but, unless a new
compound is highlighted, papers detailing the pharmacological
studies are considered to be beyond the scope of this review. In
the area of synthetic organic chemistry, the review focusses on
reports of the total synthesis of marine natural products that
confirm or redefine chemical structures. No attempt has been
made to review the patent literature or conference abstracts,
although experience has shown that these are very important
sources for those seeking new structures for synthesis.
A number of rather specialized reviews appeared in 1998.
The most general and probably the most useful of these covers
‘Sulfated compounds from marine organisms’.2 Specific groups
of compounds were reviewed in ‘The structural chemistry,
reactivity, and total synthesis of dolabellane diterpenes’,3
‘Survey of oxygenated 2,11-cyclized cembranoids of marine
origin’4 and ‘Biomimetic and synthetic approaches to marine
sponge alkaloids derived from bis-pyridine macrocycles’,5
while specific groups of organisms provided the focus for
‘Lithistid sponges: star performers or hosts to the stars’,6
Chemical and biological aspects of the sponge genus Dysidea’7
and ‘Advances in chemical studies on low-molecular weight
metabolites of marine fungi’.8 Specialists will appreciate
reviews of ‘The Fusetani Biofouling Project’,9 ‘Synthesis of
marine natural products in Brazil’,10 ‘Cultivation of marine
sponges for metabolite production: applications for bio-
technology?’,11 ‘Chemical defense and evolution in the Saco-
glossa (Mollusca: Gastropoda: Opisthobranchia)’,12 and ‘Bio-
assays with marine and freshwater macroorganisms’.13
2 Marine microorganisms and phytoplankton
An anticipated bloom of bioactive metabolites from marine
bacteria did not occur during 1998 and in fact the number of
new marine bacterial metabolites appears to be in decline.
Furthermore, the ambition of culturing symbionts that produce
bioactive compounds ascribed to host invertebrates has yet to be
fully realised. None of the bacterial strains isolated from the
sponge Suberea creba produced the brominated metabolites of
the sponge and none of the metabolites, which included 2-n-
heptyl-1,2,4-trihydroxyquinoline 1, from a pseudomonad iso-
lated from the sponge could be detected in an extract of the
sponge.14 The topoisomerase I inhibitors from a Streptomyces
sp. KM86-9B, cultured from liquid expelled by squeezing an
unidentified sponge, were identified as a series of iso- and
anteiso-fatty acids.15 A sulfonic acid analogue 2 of ceramide
was the major extractable lipid of Cyclobacterium marinus.16
This journal is © The Royal Society of Chemistry 2000
Nat. Prod. Rep., 2000, 17, 7–55 7
The anthranilamide 3, which was isolated from a marine
Streptomyces sp. B7747 derived from sediment from the Gulf of
Mexico, is a phytotoxic, antimicroalgal agent.17 A Streptomyces
sp. BD-18T(41) isolated from a shallow water sediment on
Oahu produced four new quinones, halawanones A–D 4–7,18
together with the known bacterial metabolite nanaomycin D.19
Guaymasol 8 and epiguaymasol 9 were obtained from a
Bacillus sp. CNA-995 from a deep-sea sediment core.20 A strain
of Micrococcus luteus that was cultured from the surface of the
Indo-Pacific sponge Xestospongia sp. produced 2,4,4A-tri-
chloro-2A-hydroxydiphenyl ether 10, which had previously been
synthesized,21 and an acyl-1-(acyl-6A-mannobiosyl)-3-glycerol
11.22 Two marine Agrobacterium strains that were isolated from
tunicates produced sesbanimide antibiotics that had previously
been isolated from seeds of the leguminous plants Sesbania
drummondii and S. punicea:23 strain PH-130 from Ecteinasci-
dia turbinata produced sesbanamide A 12 and strain PH-A034C
from a Polycitonidae sp. contained sesbanamide C 13.24 Three
diketopiperazines, one of which, cyclo[l-(4-hydroxyprolinyl)-
d-leucine] 14, was previously undescribed, were isolated as
plant growth promotors from a marine bacterium A108
associated with a species of Palythoa.25 A Blastobacter sp.
SANK 71894 isolated from seawater in Japan produced B-
90063 15, which inhibited endothelin converting enzyme.26
A strategy that employed Stille cross-coupling chemistry was
used to prepare the antiviral agent (2)-macrolactin A 16,
(+)-macrolactin E 17 and (2)-macrolactic acid 18,27 all of
which had been isolated from an unidentified deep-sea
bacterium.28,29 Macrolactin A 16 was also synthesized by a
route that employed enantioselective dienolate aldol addition
reactions.30 The structure and stereochemistry of (+)-pericosine
B 19, which was obtained from a strain of Periconia byssoides
cultured from the gastrointestinal tract of the sea hare Aplysia
kurodai,31 have been confirmed by total synthesis.32 The
siderophore alterobactin A 20 from Alteromonas lutoviolacea33
has been synthesized in an efficient manner.34 A highly
diastereoselective asymmetric synthesis of moiramide B 21,
which is a pseudopeptide from Pseudomonas fluorescens,35 has
been reported.36 Pentabromopseudilin 22, which is an anti-
microbial agent from Pseudomonas bromoutilis37 and other
marine bacteria,38,39 was synthesized to illustrate a [3+2]
cycloaddition strategy for the synthesis of nitrogen hetero-
cycles.40
There has been a considerable increase in the number of
metabolites reported from fungi that were isolated from the
marine environment. However, the debate concerning their
classification as “marine” continues. While fungal colonies
have clearly been documented on the surface of marine algae
and sea grasses, there is a clear need to demonstrate that fungi
grow within sponges and other invertebrates. A marine isolate
of the fungus Aspergillus versicolor that was isolated from the
surface of the green alga Penicillus capitatus yielded four
sesquiterpenoid nitrobenzoyl esters 23–26, the most abundant
of which, 9a,14-dihydroxy-6b-p-nitrobenzoylcinnamolide 23,
8 Nat. Prod. Rep., 2000, 17, 7–55
showed significant cytotoxicity against the HCT-116 cell line
and moderately selective cytotoxicity against a panel of renal
tumor cell lines.41 Four tricyclic sesquiterpenes, hirsutanols A–
C 27–29 and ent-gloeosteretriol 30, were obtained from an
unidentified fungus 95-1005C cultured from an Indo-Pacific
sponge of the genus Haliclona.42 Isolation of the related
sesquiterpene hisutanol D 31 from the terrestrial fungus
Coriolus consors shows that similar metabolites can be
expected from fungi, irrespective of their origin.42 A Fusarium
sp. strain CNC-477, which was isolated from a driftwood
sample collected in a mangrove habitat in the Bahamas,
produced the sesterterpenoids neomanginols A–C 32–34, of
which 32 and 33 were cytotoxic.43
Trichodenones A–C 35–37 are cytotoxic agents that were
obtained together with harzialactones A 38 and B 39 and R-
mevalonolactone from the culture broth of Trichoderma
harzianum OUPS-N115 that was originally isolated from the
sponge Halichondria okadai.44 The fungus Corollospora
pulchella, which was cultured from driftwood collected in
Peleliu, yielded the simple lactam pulchellalactam 40, which
inhibited CD45 protein tyrosine phosphatase.45 A strain of
Penicillium waksmanii OUPS-N133 that was cultured from the
brown alga Sargassum ringgoldianum produced pyrenocines D
41 and E 42, of which the latter inhibited P388 leukemia cells.46
Three additional antialgal agents, solanapyrones E–G 43–45,
were isolated from an unidentified marine fungus CNC-159 that
was cultured from the surface of the green alga Halimeda
monile.47 Deoxynortrichoharzin 46 was obtained from a
saltwater culture of Paecilomyces cf. javanica that was isolated
from the sponge Jaspis cf. coriacea.48 The Penicillium sp. strain
OUPS-79, which was originally isolated from the marine alga
Enteromorpha intestinalis, has yielded four additional cytotoxic
agents, penostatins F–I 47–50, when grown on a different
culture medium.49 Epoxysorbicillinol 51 was obtained together
with a known metabolite from a saltwater culture of Tricho-
derma longibrachiatum that was isolated from the sponge
Haliclona sp.50
The simple phthalide corollosporine 52 was obtained from
Corollospora maritima, which is commonly found on rotting
algae and driftwood.51 A Penicillium sp. N115501 from a
Japanese marine sediment produced the antimicrobial anthrani-
lamide derivative N115501A 53.52 Gymnastatins A–E 54–58,
which show significant activity against P388 cells, are unusual
cytotoxic agents from a strain of Gymnascella dankaliensis that
Nat. Prod. Rep., 2000, 17, 7–55 9
had been cultured from the sponge Halichondria japonica.53
The same strain of G. dankaliensis contained two unusual
cytotoxic sterol derivatives, gymnasterones A 59 and B 60.54
Hypoxylon oceanicum LL-15G256 contained two antifungal
macrocyclic polylactones 15G256g 61 and 15G256d 62, which
had previously been reported from terrestrial fungi,55 and the
antifungal lipodepsipeptide 15G256e 63, which contained the
rare amino acid b-ketotryptophan.56 Aspergillamides A 64 and
B 65 are cytotoxic tripeptides from an Aspergillus sp. that was
cultured from a saline lake sediment in the Bahamas.57
Interestingly, aspergillamide A 64 consists of a 1:1 mixture of
cis and trans rotational isomers about the amide bond marked
(*).57 A marine fungus of the genus Scytalidium produced two
cyclic depsipeptides, exumolides A 66 and B 67, that inhibit the
growth of the unicellular alga Dunaliella sp. at 20 mg mL21.58
Mactanamide 68 is a fungistatic diketopiperazine produced by
an Aspergillus sp. that was obtained from a brown alga
Sargassum sp. from the Philippines.59 The marine yeast
Aureobasidium pullulans, which was cultured from an uni-
dentified Okinawan sponge, produced two diketopiperazines 69
and 70 and orcinotriol 71.60 Tryprostatins A 72 and B 73, which
10 Nat. Prod. Rep., 2000, 17, 7–55
are cytotoxic diketopiperazines from Aspergillus fumigatus
strain BM 939,61 together with their enantiomers, have been
synthesized in a relatively straightforward manner.62
The macroscopic cyanobacteria (blue-green algae) Lyngbya
majuscula continues to provide interesting new bioactive
metabolites. A specimen from St. Croix contained an additional
member of the “curacin family”, namely the antimitotic agent
curacin D 74.63 An additional synthesis of curacin A 75, which
is a potent antimitotic agent from a specimen of L. majuscula
from Curaçao,64 has been accomplished in a concise manner.65
A collection of L. majuscula from Grenada produced the
cyclopropane-containing fatty acid metabolites grenadadiene
76, which gave an interesting cytotoxicity profile, debromogre-
nadadiene 77 and grenadamide 78, which showed modest
cannabinoid receptor binding activity.66 Kalkipyrone 79 is a
toxin from an assemblage of L. majuscula and Tolypothrix sp.
collected in Curaçao.67 Carmabins A 80 and B 81 are
lipopeptides from L. majuscula that was also collected in
Curaçao.68 An assemblage of L. majuscula and Schizothrix
calcicola from Guam contained lyngbyastatin 1 82, which is an
inseparable mixture of epimers at C-15, together with an
inseparable mixture of dolastatin 12 83, which had previously
been isolated from the sea hare Dolabella auricularia,69 and its
15-epi derivative.70 The cyanophyte Symploca hydniodes
contained symplostatin 1 84, which is a homologue of the linear
peptide dolastatin 10,71 that had been isolated previously from
D. auricularia.72 Louludinium chloride 85 is a moderately
cytotoxic pyridinium salt from a specimen of L. gracilis
collected at Palmyra atoll lagoon.73 Phormidium ectocarpi,
which was isolated as an epiphyte of Udothea petiolata from
Mallorca, contained hierridin B 86 and the known metabolite
2,4-dimethoxy-6-heptadecylphenol.74 (2)-Malyngolide 87,
which is an antimicrobial lactone from L. majuscula,75 has been
Nat. Prod. Rep., 2000, 17, 7–55 11
synthesized by four addtional routes that employ different
strategies to accomplish the desired asymmetry.76–79
The epiphytic dinoflagellate Coolia monotis contained a new
ceramide 88.80 The symbiotic dinoflagellate Symbiodinium sp.
(strain no. Y-6), isolated from the flatworm Amphiscolops sp.,
produced the ceramide symbioramide-C16 89, the alkaloid
zooxanthellamine 90, which closely resembles the alkaloid
zoanthamine that was previously isolated from an Indian
Zoanthus sp.,81 and zooxanthellabetaine A 91.82 Luteophanols
B 92 and C 93 are additional polyols from an Amphidinium sp
(strain no. Y-52) cultured from the Okinawan flatworm
Pseudaphanostoma luteocoloris.83 Pectenotoxin-2 seco acid 94
and 7-epi-pectenotoxin-2 seco acid 95 are additional pecteno-
toxin derivatives that were produced by the dinoflagellate
Dinophysis acuta and concentrated by the New Zealand
greenshell mussel Perna canaliculus.84
The structure of (+)-amphidinolide A 96, which is a
metabolite of the dinoflagellate Amphidinium sp. isolated from
the flatworm Amphiscolops sp.,85 was confirmed by total
synthesis.86 A stereocontrolled synthesis of hemibrevetoxin B
97, which is a metabolite of the cultured dinoflagellate
Gymnodinium breve,87 was achieved in 56 steps and 0.75%
overall yield from d-mannose.88 Bacillariolide II 98, which is an
eicosanoid from the diatom Pseudonitzschia multiseries,89 has
been synthesized from (R)-malic acid.90 Raikovenal 99, a
bicyclic sesquiterpene isolated from the marine ciliate Euplotes
raikovi,91 has been synthsized by a route that involves the
formation of a bicyclo[3.2.0]heptenone intermediate as the first
step.92
3 Green algae
Among the polar metabolites of Caulerpa taxifolia from the
Mediterranean were the glycoglycerolipid 100 and the stable
enols 101 and 102, which occur in both (E) and (Z) forms.93 The
structure of the cyano-sym-triazine halimedin 103, which was
isolated from Halimeda xishaensis collected from the Xisha
Islands in the South China Sea, was determined by X-ray
analysis.94 Although the sea grass Thalassia testudinum is
certainly not a green alga, its chemistry is probably best reported
here. It has been demonstrated that the T. testudinum metabolite
luteolin 7-O-b-d-glucopyranosyl-2B-sulfate 104 inhibits the
growth of the co-occurring thaustrochytrid Schizochytrium
12 Nat. Prod. Rep., 2000, 17, 7–55
aggregatum, which is considered a fouling organism on T.
testudinum.95
4 Brown algae
An addiotional cis-dihydroxytetrahydrofuran, (6S,7S,9S,10S)-
6,9-epoxynonadec-18-ene-7,10-diol 105, was described as part
of a SAR study of the nematocidal properties of metabolites of
Notheia anomala from southern Australia.96 A related metabo-
lite of N. anomala, (6S,7S,9R,10R)-6,9-epoxynonadec-18-ene-
7,10-diol 106,97 has been synthesized in an enantiocontrolled
manner.98 Dictyopterene CA 107, which is a metabolite of
Dictyopteris spp.,99 has been synthesized using a route that
features asymmetric catalytic cyclopropenation.100
A series of endothelin antagonists, the meroditerpenoids
nahocols A 108, A1 109, B 110, C 111, D1 112 and D2 113, and
isonahocols D1 114 and D2 115, were isolated from Sargassum
autumnale from Japan.101 Two meronorsesquiterpenes, cysto-
mexicones A 116 and B 117, together with 4-(5-hydroxy-
2-methoxy-3-methylphenyl)-butan-2-one 118 were isolated
from Cystoseira abies marina from Tenerife.102 Two diaster-
eoisomeric meroditerpenes 119 and 120 and two new steroids,
(20S)-3b,20-dihydroxyergosta-5,24(28)-dien-16-one 121 and
3b-hydroxyergosta-5,24(28)-dien-16-one 122 were obtained
from a South Australian specimen of Cystophora brownii.103
(+)-Zonarol 123, which is an antifungal sesquiterpene hydro-
quinone from Dictyopteris zonaroides,104 has been synthesized
using an enantioselective enzymatic hydrolysis reaction to
obtain chiral intermediates.105 Stypodiol 124, which is an
ichthyotoxic agent from Stypopodium zonale,106 has been
synthesized using an efficient stereoselective route from
(+)-carvone.107 Two crenulide diterpenes, 14-hydroxyacetoxy-
crenulide 125 and 13-hydroxyacetoxycrenulide 126, were
isolated from a Dictyota sp. from Chile.108 Five linear
diterpenes eleganolone 127, eleganolone acetate 128, ele-
gandiol 129, eleganonal 130 and epoxyeleganolone 131 from
Nat. Prod. Rep., 2000, 17, 7–55 13
Cystoseira balearica109,110 or Bifurcaria bifurcata111 have been
synthesized from farnesol in high overall yields.112
5 Red algae
Four methoxylated fatty acids, 9-methoxypentadecenoic acid
132, 9-methoxyheptadecenoic acid 133, 13-methoxyheneicosa-
noic acid 134 and 15-methoxytricosanoic acid 135, were
isolated as their methyl esters from a Sicilian specimen of
Schizymenia dubyi after treatment with 3% hydrochloric acid in
methanol, but it is not clear whether the methoxylated fatty
acids were present prior to methylation.113 Sulfoquinovosyldia-
cylglycerol KM043 136 is a potent inhibitor of eukaryotic DNA
polymerases and HIV-1 reverse transcriptase type 1 from a
Japanese specimen of Gigartina tenella.114 Among the con-
stituents of a specimen of Gracilaria coronopifolia collected
one week after an outbreak of G. coronopifolia food poisoning
in Maui were two new malyngamides M 137 and N 138 together
with malyngamide I acetate 139.115 The same group also
isolated anhydrodebromoaplysiatoxin 140 and the known116
metabolite manauealide C from G. coronopifolia.117 The
authors conclude that the specimen of G. coronopifolia was
most likely contaminated with the cyanophyte Lyngbya ma-
juscula and propose that malyngamide N 138 represents a
revised structure for deacetoxystylocheilamide, which had been
isolated earlier from the sea hare Stylocheilus longicauda.118
The absolute configuration of constanolactone E 141, which is
an eicosanoid from Constantinea simplex,119 has been deter-
mined by total synthesis.120 The structure and absolute
configuration of polycavernoside A 142, which is a human toxin
isolated from Polycavernosa tsudai,121 have been established
by total synthesis.122 An efficient synthesis of trans-kumausyne
143, which is a metabolite of Laurencia nipponica,123 involved
a tandem intramolecular alkoxycarbonylation-lactonization
step.124
Four sets of halogenated monoterpenes, pantopyranoids A–C
14
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