doi:10.1152/physiol.00042.2005 21:38-47, 2006.Physiology
Barbara Calabrese, Margaret S. Wilson and Shelley Halpain
Development and Regulation of Dendritic Spine Synapses
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organelle called the “spine apparatus” (34). Endocytic
machinery is also identified in spines, within special-
ized subdomains (88, 102). In addition, polyribosomes
and protein translational machinery are often
anchored at the base of spines (80). Thus increasing
evidence suggests that individual spines represent
partially autonomous compartments, having their
own regulated membrane-trafficking events that shut-
tle components into and out of the spine membrane.
Together, these specialized molecular assemblies
determine spine shape and, most importantly, enable
the postsynaptic neuron to respond biochemically to
glutamate or other transmembrane signals (44, 100,
127). Proteomic approaches have begun to unravel the
molecular composition of isolated PSD fractions and
glutamate receptor complexes and have uncovered a
remarkable degree of complexity (48, 83, 116, 124).
Although it appears that all spines share several core
components, at least some of the apparent molecular
complexity probably reflects the fact that individual
spine synapses are heterogeneous, exhibiting variable
levels of important signaling molecules that can fine-
tune individual synaptic responses.
Despite advances in our understanding of the
molecular composition of spines, their function is not
entirely understood. For example, why do some
synapses occur on spines and others (“shaft synaps-
es”) directly on the dendrite? One widely accepted
explanation is that spines provide biochemical com-
partmentalization (76). The narrow neck of the spine
creates a spatially isolated compartment where bio-
chemical signals can rise and fall without spreading to
neighboring synapses along the parent dendrite, thus
allowing the isolation and/or amplification of incom-
ing signals. Similarly, a spine compartment may help
confine membrane trafficking to a localized region.
Such restriction of molecular signals to one spine may
contribute to the phenomenon of “input specificity,”
allowing a given set of nerve terminals to induce
changes only at those synapses that are specific to
their postsynaptic contacts and not at other synapses
on the same neuron that are driven by different axons
(64).
38 1548-9213/06 8.00 ©2006 Int. Union Physiol. Sci./Am. Physiol. Soc.
Dendritic Spines: What Are They?
What Are They For?
Dendritic spines are micron-sized protrusions of the
dendritic membrane that serve as the postsynaptic
component for the vast majority of central nervous
system excitatory synapses. They are found on excita-
tory and inhibitory neurons including glutamatergic
pyramidal neurons of the neocortex and hippocampus
as well as GABAergic cerebellar Purkinje neurons and
medium-sized projection neurons of the striatum.
Although their existence has been known for over a
century (89), their ultrastructural and molecular
organizations have only recently begun to be elucidat-
ed due to advances in microscopy and molecular
approaches. The number and shape of dendritic
spines are varied and highly mutable on time scales
ranging from seconds to days, and morphological dif-
ferences between spines are known to reflect function-
al differences (42). Furthermore, spine numbers and
shape are regulated by both physiological and patho-
logical events.
Most mature spines have a club-like morphology,
with variably-shaped bulbous tips, ~0.5–2 �m in
diameter, connected to the parent dendrite by thin
stalks 0.04–1 �m long (41). Spine density ranges from
1 to 10 spines per micrometer length of dendrite,
depending on neuronal cell type and maturational
stage. By electron microscopy, the ultrastructure of
dendritic spines is characterized by a conspicuous
postsynaptic density (PSD). The PSD is a compact
matrix that lies just beneath the postsynaptic mem-
brane. It organizes the receptors and signaling mole-
cules that are positioned across the synaptic cleft from
clusters of presynaptic neurotransmitter vesicles (98).
The shape and stability/motility of spines are deter-
mined by a cytoskeleton composed mostly of filamen-
tous actin (F-actin). Spines are nearly completely
devoid of the intermediate filaments and micro-
tubules that are plentiful in the dendritic shaft (48).
Despite their modest size, most spines contain at least
some form of smooth endoplasmic reticulum, which
in the largest spines takes the form of a specialized
REVIEWS
Development and Regulation of Dendritic
Spine Synapses
Barbara Calabrese, Margaret S.
Wilson, and Shelley Halpain
Department of Cell Biology and Institute for Childhood and
Neglected Diseases, The Scripps Research Institute, La
Jolla, California
shelley@scripps.eduDendritic spines are small protrusions from neuronal dendrites that form the postsy-
naptic component of most excitatory synapses in the brain. They play critical roles in
synaptic transmission and plasticity. Recent advances in imaging and molecular tech-
nologies reveal that spines are complex, dynamic structures that contain a dense
array of cytoskeletal, transmembrane, and scaffolding molecules. Several neurologi-
cal and psychiatric disorders exhibit dendritic spine abnormalities.
PPHHYYSSIIOOLLOOGGYY 2211:: 3388––4477,, 22000066;; 1100..11115522//pphhyyssiiooll..0000004422..22000055
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Spine Development
During early synaptogenesis, dendritic shafts are cov-
ered with filopodia, which are long, narrow protru-
sions that are more transient and contain less F-actin
than spines. Neuronal growth cones also display
numerous filopodia, but these seem to be somehow
distinct. Growth cone filopodia are involved in activi-
ty-independent dendritic growth and branching,
whereas the filopodia that protrude from the dendrite
shaft are involved in activity-dependent synaptogene-
sis (87). Dendritic filopodia transiently extend and
retract from the dendritic shaft with an average life-
time of ~10 min (129). Filopodia probably function to
maximize the chance encounter between a developing
axon and a target dendrite. Once contact is made—
either physically via cell-cell adhesions or chemically
via locally released signals—a synapse can be initiated
and proceed through appropriate maturational steps.
Such maturation requires intricate crosstalk between
the nascent presynaptic and postsynaptic parts of the
synapse (31).
As synapse formation progresses over the course of
several days, the numerous dendritic filopodia are
gradually replaced by spines (67). It appears that
many, but not all, spine synapses result when synaps-
es initially form on filopodia, which then “convert”
directly into spines. However, other synapses form
directly on the dendritic shaft, followed by the gradual
emergence of spines at the site of contact (24).
Laboratory observations suggest that both mecha-
nisms can and do occur even within a single neuron
(22). It should be noted, however, that not all filopodia
are transformed into spines (129). Filopodia are also
found on nonspiny neurons during early synaptogen-
esis (121). Thus multiple factors, including cell-recog-
nition molecules and downstream signals, orchestrate
both synapse identity and synapse shape during neu-
ronal maturation.
Regulation of Spine Development
The exquisite molecular organization of the pre- and
postsynaptic apparatus requires positional informa-
tion to coordinate the correct placement of pre- and
postsynaptic elements. Once synapses have appeared,
the next steps are to ensure synaptic specificity and to
strengthen or weaken synaptic connections (126),
processes that are believed to be at the core of learning
and memory. The formation of synapses and their
neurotransmitter specificity are controlled by the
expression of adhesion and signaling molecules,
including several classes of neural cell adhesion mole-
cule (NCAM), N-cadherins, protocadherins, neurexins
with their neuroligins, Eph receptors with their ephrin
ligands, and extracellularly secreted molecules like
proteoglycans (107, 117). The formation of cell-cell
contacts at synapses is similar in basic principles to
formation of junctions between nonneuronal cells.
However, the polarized, asymmetric nature of pre- and
postsynaptic elements confers unique demands on
synaptic junctions. Identification of the key signals
that establish initial contact is a rapidly growing area
of investigation. Much of the remarkable diversity in
synaptic function that varies across brain region, neu-
ron type, maturational state, and activity level may
stem from diversity in the molecules that govern
synaptogenesis.
Cadherins are a family of calcium-dependent
homotypic cell-adhesion molecules (CAMs) that are
found in nearly all cells; neurons express an isoform
known as N-cadherin (107). As synapses are initiated,
N-cadherin begins to cluster on both pre- and postsy-
naptic sides of the nascent synapse. This clustering
and adhesion is required to establish strong, stable
junctions. In older synapses, N-cadherin clusters are
mainly concentrated lateral to the PSD (106, 107, 113).
To establish strong adhesion, N-cadherins must link to
the cytoskeleton by binding to �-catenin, which in
turns binds to �-catenin, which binds directly to F-
actin. The cadherin/�-catenin complex also bridges to
the actin cytoskeleton indirectly via actin-binding pro-
teins such as �-actinin or profilin (74). The expression
of a dominant-negative truncated N-cadherin, lacking
parts of its extracellular domain, leads to massive mor-
phological and functional perturbation of spines and
synapses in hippocampal neurons (111). These results
are supported by studies with �-catenin-deficient
neurons that suggested that �-catenin is required for
both N-cadherin-mediated adhesion and the shorten-
ing of spines and the maturation of synapses (1).
Importantly, depolarization-induced redistribution
and association of �-catenin with N-cadherin indi-
cates an active involvement of �-catenin in N-cad-
herin-mediated synaptic adhesion (71). �-Catenin’s
phosphorylation state regulates its redistribution
between the dendritic spine or the shaft compart-
ment: a single point mutation (Y654F) that prevents
phosphorylation by a tyrosine kinase concentrates �-
catenin in spines, whereas a single point mutation that
mimics phosphorylation (Y654E) accumulates �-
catenin in dendritic shafts (71). Other catenins known
as �-catenins also participate in spine regulation (57).
They not only bind to classical cadherins but also
interact directly with cortactin in a tyrosine phospho-
rylation-dependent manner (65).
The protocadherins represent the largest subgroup
of the cadherin superfamily, and they display numer-
ous splice variants that could potentially encode
aspects of synaptic diversity (55). Protocadherin extra-
cellular domains exhibit characteristics of calcium-
dependent adhesion molecules, but their cytoplasmic
domains are different from those of classical cad-
herins. The �- and �-protocadherin proteins are
enriched in neurons and targeted to synapses (86).
Synapse number is reduced in the spinal cord of mice
39PHYSIOLOGY • Volume 21 • February 2006 • www.physiologyonline.org
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shown that neuroligin splice variants can display dis-
tinct neurexin binding preferences and thereby induce
distinct effects on synapse formation (9). In addition,
association with postsynaptic scaffolding proteins,
such as PSD-95, regulates the distribution of NLs and
their synaptogenic activity. Whereas NL-2 is usually
prevalent at inhibitory synapses, an increase in PSD-
95 levels through overexpression sequesters NL-2 at
excitatory postsynaptic sites (114), thereby reducing
its distribution to inhibitory synapses. This results in
an increased ratio of excitatory to inhibitory synaptic
contacts (59, 60).
Extracellularly secreted molecules can also influ-
ence spine development. Syndecan-2, a heparin sul-
fate proteoglycan, was one of the first molecules iden-
tified that can trigger spine formation (23). Syndecan-
2 accumulates on spines beginning at the onset of
spine formation, and spine-like structures lacking
synaptic contacts can be induced when syndecan-2 is
overexpressed in neurons before spinogenesis (23).
Brain-derived neurotrophic factor or stimulation of its
receptor, TrkB, increases Purkinje and hippocampal
cell spine density (53, 99). Soluble glia-derived signals
are also important in synapse formation and matura-
tion. One such signal secreted by astrocytes is choles-
terol, which becomes bound to apoE-containing
lipoproteins (68). In addition, thrombospondins
released by astrocytes have been identified as partici-
pating in synaptogenesis (16), and tissue plasminogen
activator regulates spine pruning (66).
Intracellular components of normal spines can also
sometimes trigger formation of spine-like protrusions
in neurons that normally lack spines. For example,
overexpression of the glutamate receptor 2 (GluR2)
subunit of AMPA receptors induces spine formation in
GABA-releasing interneurons, which normally lack
spines (82). Also, overexpression of Shank, a scaffold-
ing molecule that links up to the actin cytoskeleton,
can trigger spine formation in such aspiny inhibitory
neurons (92), whereas in spiny excitatory neurons,
where it is expressed naturally, Shank overexpression
induces spine enlargement (94). Such studies demon-
strate that certain synaptic molecules can recruit the
necessary cytoskeletal and membrane components
that enable the postsynaptic membrane to reorganize
and protrude into a spine-like structure.
Interactions between the membrane-bound ligands
ephrins and their tyrosine kinase receptors, Ephs, can
also strongly alter spine morphology. Neurons from
mice lacking the three receptors EphB1, B2, and B3 fail
to form mature spines in vitro, retaining immature
filopodia and develop abnormal spines in vivo (43).
The binding of ephrin B to EphB triggers various signal
transduction pathways involving Rho-family GTPases
(see below).
In summary, dendritic development and differenti-
ation are regulated by a combination of neurotrophin,
cell adhesion, and neural and glial activities. However,
40 PHYSIOLOGY • Volume 21 • February 2006 • www.physiologyonline.org
lacking protocadherin-� proteins, suggesting that they
may be essential for the assembly of certain synapse
populations (119).
Other candidates for mediating synapse selectivity
include several members of the immunoglobulin
superfamily of CAMs, which, like the cadherins, work
through homotypic association of their extracellular
domains to join adjacent cells. CAMs work in concert
dynamically together with integrins to mediate and
regulate adhesion across the synapse (4, 5, 12). Such
immunoglobulin family members include, among
others, NCAM, synaptic cell adhesion molecule, and
nectin, and these are known in many cases to affect
dendritic spine shape and development (see Ref. 117
for review).
The neurexin-neuroligin system has received recent
attention as a major regulator of synapse and spine
formation (95). These molecules work transsynapti-
cally in pairs at both glutamatergic and GABAergic
synapses, generally with neurexin on the presynaptic
side inducing postsynaptic differentiation and neu-
roligin on the postsynaptic side inducing presynaptic
differentiation (33).
One crucial aspect of synapse formation is whether
a nascent synapse will develop into an excitatory or
inhibitory contact. The tight balance between excita-
tory vs. inhibitory synapses regulates the overall
excitability of the neuron and is thus critical for nor-
mal circuit establishment and firing pattern. The
importance of the neuroligin family in this function
was demonstrated using RNA interference directed
against the neuroligin isoforms NL-1, -2, and -3, which
showed that decreased expression of neuroligin
resulted in a loss of both excitatory glutamatergic and
inhibitory GABAergic synapses in cultured rat hip-
pocampal neurons. The loss of glutamatergic synapses
was accompanied by a dramatic decrease in dendritic
spines. However, the loss of inhibitory synapse func-
tion was more predominant, resulting in a shift in the
balance of excitability (14). In a complementary study
it was shown that �-neurexin expressed on the surface
of nonneural cells or attached to synthetic beads was
by itself sufficient to induce the formation of postsy-
naptic specializations in contacting dendrites (33).
Initially it was thought that the localization of NLs,
rather than their isoform, was the key determinant of
synapse phenotype (59). However, it was recently
REVIEWS
“...wholesale spine turnover and
morphological changes in existing spines are
important for establishing and modulating
synaptic circuits during development and synap-
tic plasticity.”
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research continues to uncover new and unexpected
pathways that affect spine de
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