58 Pharmaceutical Technology MARCH 2012 PharmTech .com
The health implications of drug impurities can
be significant because of potential teratogenic,
mutagenic, or carcinogenic effects. Controlling
and monitoring impurities in APIs and finished
drug products, therefore, is a crucial issue
in drug development and manufacturing,
In Part II of this article, the authors examine
impurities from chiral molecules, polymorphic
contaminants, and genotoxic impurities.
Kashyap R. Wadekar, PhD,* is a research
scientist (II), Mitali Bhalme, PhD, is an associate
research scientist, S. Srinivasa Rao is a research
associate, K. Vigneshwar Reddy is a research
associate, L. Sampath Kumar is a research chemist,
E. Balasubrahmanyam is a research chemist, and
Ponnaiah Ravi, PhD, is senior vice-president of R&D,
all with Neuland Laboratories, 204 Meridian Plaza, 6-3-
854/1, Ameerpet, Hyderabad, India, tel. 91 40 30211600,
kashyapwadekar@neulandlabs.com.
*To whom all correspondence should be addressed.
Submitted: Sept. 19, 2011; Accepted Nov. 28, 2011.
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Impurities
T
he public and the pharmaceutical industry are placing
greater attention on impurities in drug as evidenced
by the attention given to pharmaceutical impurities in
books, journal articles, and national and international
guidelines (1–10). The health implications of impurities can
be significant because of their potential teratogenic, muta-
genic, or carcinogenic effects. Controlling and monitoring
impurities in APIs and finished drug products, therefore,
is a crucial issue in drug development and manufacturing.
Part I of this article, which appeared in the February 2012
issue of Pharmaeceutical Technology, discussed the various
types and sources of impurities with specific case studies
(11). This article, Part II, discusses chiral, polymorphic, and
genotoxic impurities (12, 13). Part III, to be published in the
April 2012 issue of Pharmaceutical Technology, will examine
various degradation routes of APIs, impurities arising from
API–excipient interaction during formulation, metabolite
impurities, various analytical methodologies to measure
impurity levels, and measures to control impurities.
Chiral impurities
Impurities can be present in the enantiomers of chiral com-
pounds. Differences in pharmacological and toxicological
profiles have been observed with chiral impurities in vivo
(14, 15). The significance of stereochemical purity may be
illustrated by formoterol, a selective β2-adrenoceptor ago-
nist (16). This compound contains two chiral centers. Initial
investigations indicated that the β2-agonist activity resided
in the stereoisomer with the (R, R) absolute configura-
tion with a rank order of potency (R, R) > (R, S) > (S, S) >
(S, R). Subsequent investigation reported much greater dif-
ference with the eudismic ratio R, R/S, S increasing from 50
to 850 when the impurity of the eutomer in the diastereomer
decreased from approximately 1.5 % to < 0.1% (17). Simi-
lar examples of stereochemical isomers can be found in the
stereospecific drugs of the (S)-enantiomer of α-methyldopa,
picenadol, (R)-sopromidine, (+)-(S)-apomorphine, and ser-
traline (18–24).
Another example is asenapine maleate, an antipsychotic
belonging to the dibenzo-oxepino pyrroles class. Based on
its receptor pharmacology, the efficacy is thought to be
mediated by its antagonist activity on dopamine (D)-2 and
Evaluating Impurities in Drugs
Part II of III
Kashyap R. Wadekar, Mitali Bhalme, S. Srinivasa Rao, K. Vigneshwar Reddy,
L. Sampath Kumar, E. Balasubrahmanyam, and Ponnaiah Ravi
Pharmaceutical Technology MARCH 2012 59
serotonin (5-HT)–2A receptors (25). Asenapine shows
geometric isomerism and is a racemate of (+) and (-) enan-
tiomers. It shows comparable binding affinities, meaning
trans-asenapine showed higher affinity at D4 receptors than
(+)/cis-asenapine (26).
Differences in pharmacological and toxicological pro-
files have been observed with chiral impurities in vivo,
suggesting that chiral impurities should be monitored
carefully. Although development of chiral drugs as single
stereoisomers is a preferred approach, consideration must
be given to unwanted stereoisomers, which may be present
as impurities or degradants in the drug substance or drug
product or generated through metabolism in biological
systems. Chiral impurities in pharmaceutical samples may
occur as side-products of the synthetic process as a result of
an inversion of chiral centers due to chemical degradation
of the drug substance or both. Similarly, inversion of the
chiral center may occur in vivo as a result of metabolism,
chemical degradation, or both.
Guidelines on the development of chiral compounds
are published by regulatory authorities around the world,
but they can be general and leave room for interpretation.
The issues involved in chiral drug development are com-
plex, and a coordinated approach among the many R&D
groups is necessary. A multidisciplinary approach serves
as a guide to the development of chiral compounds by co-
ordinating research efforts in the various phases of devel-
opment (22–36).
Polymorphic impurities
Polymorphism, the ability of a compound to exist in more
than one crystalline form, affects the physical, chemical,
and biological properties of a compound in question (37).
These properties may influence several issues in pharma-
ceutical systems, such as processing characteristics, drug
stability, and bioavailability. Demonstrating an under-
standing of the polymorphs in a given drug is an area of
regulatory scrutiny in new drug applications (38).
The International Conference on Harmonization’s Q6A
guideline, Specification: Test Procedure and Acceptance
Criteria for New Drug Substances and New Drug Products:
Chemical Substances, outlines when and how polymorphic
forms should be monitored and controlled (39). For sta-
bility concerns, the most stable form is normally used in
the formulation. The metastable polymorphic form, how-
ever, may be inadvertently generated due to temperature,
mechanical treatment, and moisture during processing or
storage of the drug product (40).
Contamination of polymorphic impurities can adversely
influence the stability and performance of the final drug
product. Moreover, FDA requires development of validated
methods for analysis of the proportion of crystalline forms
throughout the drug’s retest period and shelf life (41).
For example, olanzapine crystallizes in more than 25
crystalline forms, of which Form II has been designated
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the most stable form and is used in
the dosage form (42, 43). Olanzapine
discolors in the presence of air (44).
Polymorphic Forms I and II show very
minor differences in their diffracto-
grams. Evaluating olanzapine Form I
for the presence of Form II, therefore,
becomes very important.
Salmeterol xinafoate is known to
exist in two crystalline polymorphic
forms, with Form I being stable and
Form II being the metastable poly-
morph under ambient conditions (45).
These polymorphs have been char-
acterized using differential scanning
calorimetry, X-ray powder diffrac-
tometry, thermogravimetric analysis,
and inverse gas chromatography (46).
Commercial salmeterol xinafoate is a
micronized form with the same crystal
structure as that of Form I. The com-
mercial drug, however, can contain
traces of the Form II polymorph that
is formed during the micronization
process.
Exceptional case impurities
When a new process is developed, such
as to overcome patent issues, it gener-
ally begins with new key starting ma-
terials, intermediates, reagents, or sol-
vents that may react differently to give
byproducts or process impurities. For
example, in the synthesis of linezolid
and pemetrexed disodium, several pro-
cess impurities can be formed due to
different process approaches.
Pharmaceutical companies can
develop new processes based on raw
materials, solvents, reagents, process
conditions (i.e., temperature), and
new polymorphs. Using new materi-
als or processes, they may encounter
several impurities that may not have
been not present in the basic or ini-
tial synthesis of an API. After publi-
cation of monographs in the United
States Pharmacopeia , European
Pharmacopoeia, British Pharmaco-
poeia, Indian Pharmacopoeia, and
Japanese Pharmacopoeia, they may
not have a control of those impuri-
ties that are formed due to different
process approaches. After publica-
tion of the monograph, companies
have to change the analytical method
or control these impurities as non-
pharmacopeial impurities, including
genotoxic impurities, with separate
analytical methods, such as high-
performance liquid chromatography
(HPLC) or gas chromatography (GC).
For example, during the synthesis
of linezolid, impurities based on a bis-
linezolid compound and a bis-benzyl
impurity are formed due to the non-
infringed patent process (47–49). Some
published patents have different poten-
tial process impurities, which cannot
be separated in a single HPLC method,
and which result from synthetic routes
different from the synthetic route in
the basic patent (47–55).
Pemetrexed disodium heptahydrate,
the API in Eli Lilly’s Alimta, is a multi-
targeted antifolate used to treat meso-
thelioma and a second-line treatment
for non-small-cell lung cancer. Alimta
also is under investigation for multiple
other cancers (56). Each non-infringed
process patent has different potential
impurities (see Figure 1, Process Impu-
rities 1, 2, 3, and 4) (57–60). It may not
be possible to analyze these impurities
in a single HPLC method.
Impurities due to the piperazine ring
The piperazine moiety is present in the
chemical structure of more than 200
drugs. The biotransformation of the
piperazine ring involves several well-
known metabolic reactions, including
N-oxidation, hydroxylation, N-deal-
kylation, and ring cleavages to N-sub-
stituted as well as N,N ’-disubstituted
ethylenediamines. In addition, several
unexpected metabolic pathways have
been reported for the piperazine ring:
N-glucuronidation, N-sulfonation,
formation of carbamoyl glucuronide,
and glutathione adducts (61). Some
compounds containing the piperazine
ring indicate that the ring is normally
metabolically stable when both nitro-
gen atoms are substituted with groups
larger than ethyl.
The lack of partial degradation of
the piperazine ring to form ethylene-
diamine in olanzapine (2-methyl-4-(4-
methyl-1-piperazinyl)10H-thieno[2,3-
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b][1,5]benzodiazepine) is slightly surprising. Some major
metabolites were reported in humans plasma and urine,
such as 4’-N-glucuronide and 4’-N-glucuronide (61, 62).
Several other metabolites also were reported in mice, rats,
monkeys, and dog urine (63). The ethylenediamine impu-
rity, however, is not reported as a metabolite and a process
impurity (see Figure 2).
When one of the nitrogen atoms is substituted by hy-
drogen on the piperazine ring, whether its methyl or ethyl,
ethylenediamine formation is normally observed. An ex-
ample is levofloxacin, S-(-)-9-fluoro-2,3-dihydro-3-methyl-
10-(4-methyl-1-piperazinyl)-7-oxo-7H-pyrido[1,2,3-de][1,4]
benzoxazine-6-carboxylic acid, which is the (S)-isomer of
ofloxacin. In levofloxacin, the piperazine nitrogen atom is
substituted with methyl due to several photodegradation im-
purities (see P 2 to P 10, Figure 3) (64–67). Some process im-
purities also are observed (see Figure 3). If the levofloxacin
process involved methylenedichloride as a solvent, a chloro
methyl impurity may form, and after isolation of the final
product, the same impurity may convert to a di-quaternary
cyclic piperazine impurity.
Additionally, when the ciprofloxacin (1-cyclopropyl-6-
fluoro-1,4-dihydro-4-oxo-7-(piperazin-1-yl) quinoline-3-
carboxylic acid) nitrogen atom is substituted by hydrogen
on the piperazine ring, several metabolites and process im-
purities are formed (see Figure 3) (68–74). When nitrogen is
substituted with hydrogen during the reaction, two dimer
impurities (F-F dimer ciprofloxacin and F-Cl dimer cipro-
floxacin) also are observed (75).
Impurities
Figure 1: Reaction scheme for different process approaches for pemetrexed sodium impurities, respectively labeled as 1, 2, 3, and 4
(Refs. 57–60). Ph. Eur. is European Pharmacopoeia.
Key starting material
for pemetrexed
H
2
N N
N
N
H
OH
H
2
N
H
2
N
H
2
N
NH
2
NH
NH
NH
NH
1
Process impurity
2
Process impurity
3
Process impurity
4
Process impurity
NO
2
H
2
N N
N
N
H
NH
O
NH
N
H
N
H
O
NH
O
COONa
COONa
COONa
COONa
COONa
COONa
Structure in
literature/patents
Structure in
draft Ph. Eur. monograph
Pemetrexed disodium
Tautomer impurity
OH
H
2
N N
N
H
O
H
2
N N
N
H
O
COOCH
3
COOCH
3
COOAr
COOAr
COOR
COOH
COOH
COOR
N
N
H
N
N
N
N N
N
N
N
N
N
N
H
H
H
H
O
O
O
O
OH
O
O
O
OH
O
A
L
L
f
IG
u
R
e
S
A
R
e
c
O
u
R
T
e
S
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O
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Genotoxic impurities
There was no specific document on control of genotoxic
impurities before 2000. ICH guidelines made passing
references to compounds of unusual toxicity. Geno-
toxic impurities are chemical compounds that may be
mutagenic and could potentially damage DNA (76).
Non-monoalkylated agents are classified as genotoxic
due to the nature of the functional groups they pos-
sess and also of related aniline derivatives. Addition-
ally, salt-forming steps can introduce genotoxic im-
purities. Some examples include formation of methyl
chloride as a side reaction of hydrochloric acid in meth-
anol or esters of methanesulfonic acid as byproducts
from the methanesulfonic acid salt-formation step in
alcohol-based solvents (77, 78).
EMA issued guidelines on the threshold of toxicological
concern (TTC) that recommended limits for exposure to
potential genotoxic impurities to be 1.5 mcg per day for
commercially approved drugs (79). As per the guidelines,
testing will be required for all potential impurities from an
API’s synthetic route containing structural elements that
are the cause of concern for genotoxicity potential using
the well-established Salmonelle Ames test. The Ames test
is a screening test that is used to help identify chemicals
that affect the structure of DNA. The test exposes Salmo-
nella bacteria to chemicals and looks for changes in the
way bacteria grow. These changes result from mutations
that occur when the structure of DNA is altered in certain
places and the micronuclei test for mutagenicity (80, 81).
Impurities
Figure 2: The piperazine ring and metabolite impurities of olanzanpine. Ph. Eur. is European Pharmacopoeia. USP is US Pharmacopeia.
H
N
N
N
N
S
H
N
N
N
N
S
7-Hydroxy glucuronide
metabolite
7-Hydroxy N-Oxide
metabolite
N-Oxide-2-acid
metabolite
N-Oxide-2-Hydroxy methyl
metabolite
N-desmethyl-2-Hydroxy methyl
metabolite
N-desmethyl-2-acid
metabolite
4’- N - Glucuronide
metabolite
10- N - Glucuronide
metabolite
Ring-opening amide impurity
process impurity
Chloro methyl impurity
Ph. Eur. impurity C
process impurity
Cl-
Cl-
Cl-
2-acid
metabolite
2-Hydroxy methyl
metabolite
N-Oxide process impurity
Ph. Eur. impurity D
and metabolite
N-Formal impurity
process impurity
N-Des methyl
process impurity
and metabolite
7-Hydroxy
metabolite
O
O
Gluc-O-
HO
H
N
N
N
N
S
H
N
N
N
N
S
O
H
N
N
N
N
S
H
N
N
N
N
S
N
N
N
S
HO
OH
OH
H
N
N
N
N
S
H
N
N
N
S
OH
N
N
Gluc
Gluc
O
H
N
N
N
N
S
H
N
N
N
S
OH
OH
NH
H
N
N
N
S
OH
O O
NH
NH
2
NH
2
NH
S
O
NH
2
NH
N
N
N
N
N+ Cl
N
HS
S
N
N+
N+
N
H
S
O
Plausible Structure
NH
2
N
N
H S
Oxidative
ring-opening of
piperazine
N
N
NH
NH
2
H
S
Further degradation
impurity
NH
N
N
NH
H
S
Amide process impurity
USP impurity B
Ph. Eur. impurity BN
N
H
H
S
O
N
N
N
N
H S
O
N
Olanzapine
N
N
N
H
S
H
N
N
N
N
(?)
Olanzapine
Tautomer impurity
S
H
N
N
N
NH
S
N
N
N
N
S
H
N
N S
Dimer of olanzapine
process impurity
N
N
N
N
O
H S
N-Acetyl impurity
process impurity
N
N
H
O
HO
S
Degradation impurity
N
N
N
N
H S
OH
N-Hydroxy methyl impurity
process impurity
H
N
N
S
H
N
N
N
N
S
Piperazine dimer impurity
process impurity
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